Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7137

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15504 and 15505 are separated by 184 nucleotides15505 and 15506 are separated by 224 nucleotides mRNA_7136: 15504 - K01880 GARS, glyS1 glycyl-tRNA synthetase, at 961,158 to 963,860 15504 mRNA_7137: 15505 - KOG1933 Cholesterol transport protein (Niemann-Pick C disease protein), at 964,045 to 968,474 15505 mRNA_7138: 15506 - K14655 RIB2, PUS8 tRNA pseudouridine synthase 8 / 2,5-diamino-6-(5-phospho-D-ribitylamino)-pyrimidin-4(3H)-one deaminase, at 968,699 to 969,330 15506

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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964,087 + +0.0
964,417 + -2.2
964,546 + 15505 mRNA_7137 0.11 -3.4
964,926 + 15505 mRNA_7137 0.20 -0.5
965,167 + 15505 mRNA_7137 0.25 -1.7
965,543 + 15505 mRNA_7137 0.34 -2.7
965,558 - 15505 mRNA_7137 0.34 -2.8
965,660 + 15505 mRNA_7137 0.36 -0.9
965,684 - 15505 mRNA_7137 0.37 -1.6
965,841 + 15505 mRNA_7137 0.41 -3.9
965,901 + 15505 mRNA_7137 0.42 -1.1
966,028 - 15505 mRNA_7137 0.45 -3.9
966,089 - 15505 mRNA_7137 0.46 -2.0
966,108 - 15505 mRNA_7137 0.47 +0.4
966,888 + 15505 mRNA_7137 0.64 -1.3
967,011 + 15505 mRNA_7137 0.67 -2.1
967,438 + 15505 mRNA_7137 0.77 -3.8
967,721 + 15505 mRNA_7137 0.83 -1.8
968,030 - 15505 mRNA_7137 0.90 -3.0
968,150 - -0.6
968,182 + -2.5
968,294 - -0.8
968,306 - -2.7
968,359 + -3.1
968,457 + -0.7
968,602 - -1.6
968,623 - -0.1
968,650 + -0.3
968,654 - +0.3
969,353 - -0.1
969,376 - -0.0

Or see this region's nucleotide sequence