Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7167

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15534 and 15535 are separated by 177 nucleotides15535 and 15536 are separated by 192 nucleotides mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1,033,157 to 1,035,237 15534 mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,035,415 to 1,036,383 15535 mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,036,576 to 1,038,409 15536

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,034,859 - 15534 mRNA_7166 0.82 -0.4
1,034,859 + 15534 mRNA_7166 0.82 -1.2
1,034,870 + 15534 mRNA_7166 0.82 -0.2
1,035,042 + -0.7
1,035,143 + +0.1
1,035,183 + +1.4
1,035,208 - +0.3
1,035,222 + +0.5
1,035,268 - +1.9
1,035,293 - +0.6
1,035,319 + -0.2
1,035,348 + +0.4
1,035,376 + +1.3
1,035,419 + +0.4
1,035,420 - -0.1
1,035,459 - +1.3
1,035,466 + -0.7
1,035,519 + 15535 mRNA_7167 0.11 +0.4
1,035,570 + 15535 mRNA_7167 0.16 -1.9
1,035,644 - 15535 mRNA_7167 0.24 -0.1
1,035,658 + 15535 mRNA_7167 0.25 -1.5
1,035,664 - 15535 mRNA_7167 0.26 -0.6
1,035,665 + 15535 mRNA_7167 0.26 +0.6
1,035,687 + 15535 mRNA_7167 0.28 -0.6
1,035,737 - 15535 mRNA_7167 0.33 -0.8
1,035,887 + 15535 mRNA_7167 0.49 -2.6
1,036,045 + 15535 mRNA_7167 0.65 +0.2
1,036,189 - 15535 mRNA_7167 0.80 +0.4
1,036,265 + 15535 mRNA_7167 0.88 +0.2
1,036,281 + 15535 mRNA_7167 0.89 -1.4
1,036,298 + +0.2
1,036,354 + -1.2
1,036,357 - -0.2
1,036,416 - +1.0
1,036,418 - +1.6
1,036,480 + +1.1
1,036,486 + +0.1
1,036,522 + -0.3
1,036,531 - +0.4
1,036,538 - +1.5
1,036,538 - -0.6
1,036,539 + +0.2
1,036,545 + +0.1
1,036,553 - -0.2
1,036,555 + +0.1
1,036,558 + -0.5
1,036,569 + -0.1
1,036,571 - +0.5
1,036,575 - -0.2
1,036,576 + +0.9
1,036,577 - -0.1
1,036,582 - +0.2
1,036,587 + +0.2
1,036,591 + -0.9
1,036,596 + -1.5
1,036,621 + -1.1
1,036,630 + -0.4
1,036,632 - -1.0
1,036,635 + -0.3
1,036,643 + +0.7
1,036,681 - +0.7
1,036,681 - +1.1
1,036,692 + +1.3
1,036,698 - -1.2
1,036,713 + -0.5
1,036,724 + +0.4
1,036,740 + +0.7
1,036,775 + 15536 mRNA_7168 0.11 -0.8
1,036,789 + 15536 mRNA_7168 0.12 +0.8
1,036,867 + 15536 mRNA_7168 0.16 +0.5
1,036,895 + 15536 mRNA_7168 0.17 +0.5
1,036,901 + 15536 mRNA_7168 0.18 +0.3
1,036,906 + 15536 mRNA_7168 0.18 -0.3
1,036,906 - 15536 mRNA_7168 0.18 +0.6
1,036,908 - 15536 mRNA_7168 0.18 -0.3
1,036,918 + 15536 mRNA_7168 0.19 +1.1
1,036,938 + 15536 mRNA_7168 0.20 -0.1
1,036,952 - 15536 mRNA_7168 0.21 -0.6
1,036,972 + 15536 mRNA_7168 0.22 +1.6
1,037,005 + 15536 mRNA_7168 0.23 -0.9
1,037,017 - 15536 mRNA_7168 0.24 +1.0
1,037,054 - 15536 mRNA_7168 0.26 +1.5
1,037,056 - 15536 mRNA_7168 0.26 +0.6
1,037,070 + 15536 mRNA_7168 0.27 +1.1
1,037,073 + 15536 mRNA_7168 0.27 -2.6
1,037,087 + 15536 mRNA_7168 0.28 +0.9
1,037,164 - 15536 mRNA_7168 0.32 +0.3
1,037,213 + 15536 mRNA_7168 0.35 -0.4
1,037,221 - 15536 mRNA_7168 0.35 -0.7

Or see this region's nucleotide sequence