Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7187

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15555 and 15556 are separated by 309 nucleotides mRNA_7187: 15555 - K00799 GST, gst glutathione S-transferase, at 1,078,722 to 1,079,084 15555 mRNA_7188: 15556 - K01870 IARS, ileS isoleucyl-tRNA synthetase, at 1,079,394 to 1,083,450 15556

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,077,940 - -0.3
1,078,218 - -0.3
1,078,231 + -1.4
1,078,232 - -0.4
1,078,242 - -2.2
1,078,249 - -0.7
1,078,250 + -0.6
1,078,251 + -0.7
1,078,261 + +0.6
1,078,261 + -0.0
1,078,261 - +0.6
1,078,262 - +1.3
1,078,264 + -1.3
1,078,264 + +1.1
1,078,264 + +0.1
1,078,356 + +0.6
1,078,403 - -0.9
1,078,541 - +0.8
1,078,560 + +0.3
1,078,564 + +0.1
1,078,852 + 15555 mRNA_7187 0.36 +0.8
1,079,133 - -0.0

Or see this region's nucleotide sequence