Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7260

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15627 and 15628 are separated by 511 nucleotides mRNA_7259: 15627 - K15188 CCNT cyclin T, at 1,241,817 to 1,243,103 15627 mRNA_7260: 15628 - K09230 SCAN SCAN domain-containing zinc finger protein, at 1,243,615 to 1,245,304 15628

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,243,165 + +0.2
1,243,182 + +0.3
1,243,301 + +1.0
1,243,413 - -0.8
1,243,441 - -0.4
1,243,697 - +2.0
1,243,733 + +0.6
1,243,929 - 15628 mRNA_7260 0.19 -0.3
1,244,177 - 15628 mRNA_7260 0.33 -1.0
1,244,177 - 15628 mRNA_7260 0.33 +0.5
1,244,177 - 15628 mRNA_7260 0.33 +1.1
1,244,183 + 15628 mRNA_7260 0.34 -0.2
1,244,198 - 15628 mRNA_7260 0.34 -0.8
1,244,442 - 15628 mRNA_7260 0.49 +0.0
1,244,576 + 15628 mRNA_7260 0.57 -0.0
1,244,627 + 15628 mRNA_7260 0.60 +0.5
1,244,708 + 15628 mRNA_7260 0.65 +0.3
1,244,914 - 15628 mRNA_7260 0.77 -0.2
1,245,180 + +0.6
1,245,180 + +1.2
1,245,536 - +2.3
1,245,796 - -1.1
1,245,909 - -0.7
1,245,909 - -1.9
1,245,928 + +0.3
1,246,064 - -0.4
1,246,236 + -0.1
1,246,242 + -0.5
1,246,250 + +0.1

Or see this region's nucleotide sequence