Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7272

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15640 and 15641 are separated by 449 nucleotides mRNA_7272: 15640 - Hypothetical Protein, at 1,271,073 to 1,272,368 15640 mRNA_7273: 15641 - K15859 SKN7 osomolarity two-component system, response regulator SKN7, at 1,272,818 to 1,275,702 15641

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,270,101 + -2.0
1,270,227 - -0.3
1,270,371 - +0.1
1,270,427 - +0.7
1,270,443 + +0.3
1,270,480 + -0.3
1,270,512 + +0.6
1,270,514 - -0.1
1,270,574 + +1.5
1,270,598 - +2.3
1,270,604 - -0.0
1,270,610 + +0.9
1,270,645 - -1.7
1,270,651 + +3.0
1,270,710 - -1.0
1,270,711 + +0.4
1,270,792 - -0.9
1,270,797 + +0.8
1,270,800 + +0.7
1,270,983 + +1.1
1,271,260 - 15640 mRNA_7272 0.14 +0.1
1,271,310 - 15640 mRNA_7272 0.18 +0.3
1,271,589 - 15640 mRNA_7272 0.40 +0.9
1,271,593 + 15640 mRNA_7272 0.40 +1.8
1,271,708 - 15640 mRNA_7272 0.49 +1.3
1,271,737 - 15640 mRNA_7272 0.51 -1.3
1,271,873 + 15640 mRNA_7272 0.62 -0.1
1,271,941 + 15640 mRNA_7272 0.67 +0.9
1,271,991 - 15640 mRNA_7272 0.71 +0.3
1,272,001 - 15640 mRNA_7272 0.72 +1.0
1,272,125 + 15640 mRNA_7272 0.81 +0.2
1,272,152 - 15640 mRNA_7272 0.83 +0.1
1,272,299 + +1.3
1,272,302 - -0.5
1,272,312 + +0.1
1,272,402 + +0.0
1,272,434 - -1.2
1,272,452 - +0.3
1,272,472 - +0.6
1,272,480 + +0.6
1,272,498 + +1.1
1,272,515 - -0.1
1,272,515 - +0.8
1,272,522 + +1.2
1,272,522 + +0.8
1,272,604 + +0.1
1,272,608 - +2.5
1,272,615 - +0.7
1,272,619 + +1.1
1,272,623 + +1.3
1,272,746 - +0.7
1,272,746 - +1.4
1,272,756 - -0.9
1,272,776 + -0.1
1,272,786 - +0.8
1,272,806 - +0.7
1,273,322 - 15641 mRNA_7273 0.17 +0.0
1,273,340 - 15641 mRNA_7273 0.18 +0.9

Or see this region's nucleotide sequence