Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7278

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15645 and 15646 are separated by 235 nucleotides mRNA_7277: 15645 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,279,656 to 1,282,236 15645 mRNA_7278: 15646 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,282,472 to 1,285,388 15646

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,281,504 + 15645 mRNA_7277 0.72 -0.4
1,281,526 + 15645 mRNA_7277 0.72 -2.1
1,281,639 - 15645 mRNA_7277 0.77 +0.5
1,281,640 + 15645 mRNA_7277 0.77 +1.4
1,281,657 + 15645 mRNA_7277 0.78 +1.6
1,281,693 - 15645 mRNA_7277 0.79 -0.3
1,281,819 + 15645 mRNA_7277 0.84 +0.2
1,281,830 + 15645 mRNA_7277 0.84 -2.0
1,281,993 - +0.9
1,282,125 + +0.7
1,282,244 - +0.0
1,282,266 - +0.2
1,282,421 - +0.0
1,282,422 - +0.5
1,282,427 + +0.2
1,282,429 - -0.4
1,282,555 + -0.4
1,282,557 - -3.4
1,282,710 + +0.3
1,282,715 - -0.4
1,282,716 - +1.5
1,282,726 + -1.8
1,282,873 - 15646 mRNA_7278 0.14 +0.7
1,282,890 - 15646 mRNA_7278 0.14 +0.3
1,282,895 + 15646 mRNA_7278 0.15 -0.3
1,283,006 - 15646 mRNA_7278 0.18 -1.2
1,283,014 - 15646 mRNA_7278 0.19 -0.4
1,283,177 - 15646 mRNA_7278 0.24 +1.9
1,283,331 - 15646 mRNA_7278 0.29 +0.5
1,283,400 + 15646 mRNA_7278 0.32 -0.9
1,283,457 - 15646 mRNA_7278 0.34 +0.7
1,283,576 + 15646 mRNA_7278 0.38 +1.4
1,283,580 - 15646 mRNA_7278 0.38 +0.5
1,283,652 - 15646 mRNA_7278 0.40 -0.3
1,283,698 - 15646 mRNA_7278 0.42 +0.3
1,283,762 + 15646 mRNA_7278 0.44 -0.3
1,284,064 - 15646 mRNA_7278 0.55 +0.4
1,284,185 + 15646 mRNA_7278 0.59 -0.0
1,284,187 - 15646 mRNA_7278 0.59 +0.0
1,284,292 - 15646 mRNA_7278 0.62 +1.0
1,284,338 + 15646 mRNA_7278 0.64 +0.8
1,284,433 - 15646 mRNA_7278 0.67 -0.2
1,284,433 + 15646 mRNA_7278 0.67 -0.5
1,284,436 - 15646 mRNA_7278 0.67 +0.8
1,284,457 - 15646 mRNA_7278 0.68 -0.9
1,284,817 - 15646 mRNA_7278 0.80 +0.1
1,284,859 - 15646 mRNA_7278 0.82 +0.0
1,284,877 + 15646 mRNA_7278 0.82 +1.4
1,284,894 - 15646 mRNA_7278 0.83 -1.2
1,285,036 + 15646 mRNA_7278 0.88 -0.5
1,285,074 + 15646 mRNA_7278 0.89 -0.6
1,285,165 - +0.4
1,285,165 - +0.3
1,285,194 - -0.9
1,285,232 + +0.5
1,285,448 - -2.2
1,285,487 - -1.8
1,285,503 - +0.2
1,285,523 - -0.4
1,285,573 - -0.1
1,285,656 - +0.8
1,285,763 - +3.2
1,285,765 + -0.3
1,285,803 - -0.6
1,286,102 - +0.3
1,286,105 - +0.4
1,286,112 - -0.7
1,286,112 + -0.1
1,286,155 - +0.2
1,286,165 + +0.9
1,286,213 + -0.9
1,286,232 - -0.5
1,286,372 - +0.4

Or see this region's nucleotide sequence