Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7280

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15647 and 15648 are separated by 257 nucleotides15648 and 15649 are separated by 468 nucleotides mRNA_7279: 15647 - K13698 ABHD4 abhydrolase domain-containing protein 4, at 1,286,393 to 1,287,273 15647 mRNA_7280: 15648 - Hypothetical Protein, at 1,287,531 to 1,288,393 15648 mRNA_7281: 15649 - HMMPfam-FAR1 DNA-binding domain-PF03101, at 1,288,862 to 1,290,260 15649

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,286,547 + 15647 mRNA_7279 0.17 -1.4
1,286,727 + 15647 mRNA_7279 0.38 -0.1
1,286,844 + 15647 mRNA_7279 0.51 +0.6
1,287,009 + 15647 mRNA_7279 0.70 +0.4
1,287,168 - 15647 mRNA_7279 0.88 -1.0
1,287,176 + 15647 mRNA_7279 0.89 +0.1
1,287,194 + -0.6
1,287,329 + -1.0
1,287,331 - -0.6
1,287,445 - -1.3
1,287,474 + -0.8
1,287,615 + +1.8
1,287,619 - 15648 mRNA_7280 0.10 -0.2
1,287,870 + 15648 mRNA_7280 0.39 +0.7
1,287,938 - 15648 mRNA_7280 0.47 +0.7
1,288,323 - +0.1
1,288,490 + -1.4
1,288,589 - +2.5
1,288,670 + -0.3
1,288,691 - -1.0
1,288,692 + -0.1
1,288,749 + +1.5
1,289,340 - 15649 mRNA_7281 0.34 +0.3
1,289,365 - 15649 mRNA_7281 0.36 +0.7

Or see this region's nucleotide sequence