Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7323

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15690 and 15691 are separated by 706 nucleotides15691 and 15692 are separated by 250 nucleotides mRNA_7322: 15690 - K14849 RRP1 ribosomal RNA-processing protein 1, at 4,422 to 5,823 15690 mRNA_7323: 15691 - K10579 UBE2M, UBC12 ubiquitin-conjugating enzyme E2 M, at 6,530 to 7,758 15691 mRNA_7324: 15692 - K20967 MOCS1 GTP 3',8-cyclase / cyclic pyranopterin monophosphate synthase, at 8,009 to 10,735 15692

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
5,915 - +0.8
5,917 + +0.3
5,917 + +1.7
5,924 + +0.6
5,931 + +0.6
6,078 - +1.2
6,084 + -0.3
6,084 + -0.1
6,228 - -0.6
6,323 + +1.4
6,324 - +2.0
6,382 + -1.1
6,387 + +0.3
7,806 - +1.1
7,809 - -1.2
7,940 + +0.2
7,958 - +1.4
7,961 - -0.3
7,969 - -1.4
7,974 - -0.3
8,104 - +1.0
8,107 - +0.7
8,123 + -0.4
8,138 - +0.1
8,277 - +0.1
8,392 - 15692 mRNA_7324 0.14 -0.1
8,429 + 15692 mRNA_7324 0.15 +0.5
8,569 + 15692 mRNA_7324 0.21 +1.1
8,575 + 15692 mRNA_7324 0.21 -0.6
8,666 + 15692 mRNA_7324 0.24 -1.8
8,678 - 15692 mRNA_7324 0.25 -0.4
8,682 + 15692 mRNA_7324 0.25 +0.8
8,702 - 15692 mRNA_7324 0.25 -0.9

Or see this region's nucleotide sequence