Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7342

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15709 and 15710 are separated by 463 nucleotides15710 and 15711 are separated by 209 nucleotides mRNA_7341: 15709 - KOG4062 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair, at 41,862 to 42,699 15709 mRNA_7342: 15710 - Hypothetical Protein, at 43,163 to 45,525 15710 mRNA_7343: 15711 - K04798 pfdB, PFDN6 prefoldin beta subunit, at 45,735 to 46,573 15711

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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42,238 - 15709 mRNA_7341 0.45 +1.4
42,344 + 15709 mRNA_7341 0.58 +1.4
42,392 - 15709 mRNA_7341 0.63 +1.1
42,697 - +0.2
42,701 + +0.8
42,823 - +0.7
42,973 + +0.1
43,061 + -1.3
43,078 - +0.2
43,399 + -0.6
43,712 + 15710 mRNA_7342 0.23 -1.0
43,899 - 15710 mRNA_7342 0.31 +0.5
43,976 + 15710 mRNA_7342 0.34 -0.1
44,353 + 15710 mRNA_7342 0.50 -0.8
44,409 - 15710 mRNA_7342 0.53 -0.9
44,409 - 15710 mRNA_7342 0.53 +0.4
44,718 + 15710 mRNA_7342 0.66 -0.6
44,841 - 15710 mRNA_7342 0.71 +1.6
45,006 + 15710 mRNA_7342 0.78 +0.7
45,301 + +0.8
45,302 + +0.7
45,583 + +0.9
45,590 + +1.9
45,728 + -0.9
45,728 + -0.1
46,292 - 15711 mRNA_7343 0.66 -0.6

Or see this region's nucleotide sequence