Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7364

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15731 and 15732 are separated by 397 nucleotides15732 and 15733 are separated by 95 nucleotides mRNA_7363: 15731 - SUPERFAMILY--SSF48371, at 95,287 to 98,403 15731 mRNA_7364: 15732 - KOG1337 N-methyltransferase, at 98,801 to 102,847 15732 mRNA_7365: 15733 - Hypothetical Protein, at 102,943 to 104,194 15733

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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98,656 - -0.1
98,792 + +0.1
98,797 - -1.2
98,817 + -2.1
98,912 - +0.7
99,035 + -2.6
99,107 - -0.4
99,213 + 15732 mRNA_7364 0.10 +0.6
99,218 + 15732 mRNA_7364 0.10 +1.2
100,198 - 15732 mRNA_7364 0.35 -0.5
100,485 - 15732 mRNA_7364 0.42 +0.3
100,943 + 15732 mRNA_7364 0.53 +2.0
100,954 - 15732 mRNA_7364 0.53 -0.6
101,085 - 15732 mRNA_7364 0.56 -1.2
101,222 - 15732 mRNA_7364 0.60 +0.6
101,242 + 15732 mRNA_7364 0.60 +0.1
101,396 - 15732 mRNA_7364 0.64 +0.3
101,547 + 15732 mRNA_7364 0.68 +0.5
101,683 - 15732 mRNA_7364 0.71 +1.6
102,148 + 15732 mRNA_7364 0.83 +0.9
102,238 + 15732 mRNA_7364 0.85 +1.3
102,400 - 15732 mRNA_7364 0.89 +1.6
102,555 + +0.4
102,650 + +0.5
102,677 + -0.1
102,832 + -0.2
102,834 + -0.2
102,961 - -0.5
102,975 + +0.5
103,130 + 15733 mRNA_7365 0.15 +0.3
103,263 + 15733 mRNA_7365 0.26 -1.3
103,447 - 15733 mRNA_7365 0.40 +0.2
103,574 - 15733 mRNA_7365 0.50 +1.5
103,580 + 15733 mRNA_7365 0.51 -0.4

Or see this region's nucleotide sequence