Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7378

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_7378: 15746 - KOG1180 Acyl-CoA synthetase, at 132,149 to 133,750 15746

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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131,164 - +0.2
131,165 + +1.3
131,292 + -0.1
131,462 + +0.2
131,608 - -0.8
131,638 - +0.1
131,885 - -0.1
131,887 - -0.4
131,898 + -0.1
131,911 + +1.0
131,915 - +0.4
131,953 - -0.1
132,031 + -0.6
132,051 + -1.0
132,083 - -0.4
132,094 + +0.7
132,094 - -0.4
132,095 + +0.6
132,103 + -0.5
132,104 - -1.0
132,106 - +1.4
132,107 + +0.7
132,116 + +1.0
132,128 + +0.0
132,134 + -0.3
132,135 + +0.0
132,141 - -0.3
132,214 + -0.0
132,215 + -1.2
132,244 - -0.4
132,268 + -0.6
132,401 - 15746 mRNA_7378 0.16 -0.1
132,830 - 15746 mRNA_7378 0.43 -1.2
132,834 + 15746 mRNA_7378 0.43 -1.8
133,131 - 15746 mRNA_7378 0.61 -0.7
133,714 + +0.4
134,124 + -0.1
134,449 + -1.3
134,744 + -0.4

Or see this region's nucleotide sequence