Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7387

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15754 and 15755 are separated by 293 nucleotides15755 and 15756 are separated by 684 nucleotides mRNA_7386: 15754 - HMMPfam-F-box-like-PF12937, at 158,123 to 159,294 15754 mRNA_7387: 15755 - Hypothetical Protein, at 159,588 to 160,374 15755 mRNA_7388: 15756 - K01951 guaA, GMPS GMP synthase (glutamine-hydrolysing), at 161,059 to 163,298 15756

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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159,659 + +1.6
159,699 - 15755 mRNA_7387 0.14 +0.4
159,932 - 15755 mRNA_7387 0.44 +0.2
160,440 - +1.7

Or see this region's nucleotide sequence