Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7389

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15757 and 15758 are separated by 404 nucleotides mRNA_7389: 15757 - Hypothetical Protein, at 167,524 to 168,424 15757 mRNA_7390: 15758 - HMMPfam-Ubiquinol-cytochrome C reductase hinge protein-PF02320,SUPERFAMILY--SSF81531, at 168,829 to 169,694 15758

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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166,770 - -0.3
166,809 - +0.6
167,044 - -2.4
167,056 - +1.1
167,104 - +0.4
167,156 - -0.4
167,364 - +0.5
167,392 - -1.0
168,266 + 15757 mRNA_7389 0.82 +0.6
168,281 + 15757 mRNA_7389 0.84 +0.4
169,024 + 15758 mRNA_7390 0.23 -3.4
169,295 + 15758 mRNA_7390 0.54 -2.4

Or see this region's nucleotide sequence