Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7392

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15759 and 15760 are separated by 374 nucleotides15760 and 15761 are separated by 173 nucleotides mRNA_7391: 15759 - K00547 mmuM, BHMT2 homocysteine S-methyltransferase, at 169,814 to 171,234 15759 mRNA_7392: 15760 - Hypothetical Protein, at 171,609 to 172,297 15760 mRNA_7393: 15761 - HMMPfam-Velvet factor-PF11754, at 172,471 to 174,336 15761

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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170,704 + 15759 mRNA_7391 0.63 -0.4
171,362 - +0.2
171,486 - +0.6
172,071 + 15760 mRNA_7392 0.67 +0.6
172,940 - 15761 mRNA_7393 0.25 -0.6
173,243 - 15761 mRNA_7393 0.41 -0.6

Or see this region's nucleotide sequence