Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7403

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15770 and 15771 are separated by 721 nucleotides15771 and 15772 are separated by 208 nucleotides mRNA_7402: 15770 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 193,334 to 195,902 15770 mRNA_7403: 15771 - Hypothetical Protein, at 196,624 to 197,387 15771 mRNA_7404: 15772 - HMMPfam-Protein of unknown function (DUF2470)-PF10615, at 197,596 to 198,665 15772

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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196,095 - +0.2
196,105 + +2.7
197,412 + -0.0
197,718 + 15772 mRNA_7404 0.11 +0.1
197,996 + 15772 mRNA_7404 0.37 -0.7
198,180 - 15772 mRNA_7404 0.55 -2.3
198,280 + 15772 mRNA_7404 0.64 -0.9

Or see this region's nucleotide sequence