Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7408

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15775 and 15776 are separated by 120 nucleotides15776 and 15777 are separated by 189 nucleotides mRNA_7407: 15775 - Hypothetical Protein, at 202,077 to 204,575 15775 mRNA_7408: 15776 - K18422 MOV10 helicase MOV-10, at 204,696 to 207,946 15776 mRNA_7409: 15777 - HMMPfam-Nucleoporin subcomplex protein binding to Pom34-PF10487, at 208,136 to 214,432 15777

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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203,819 - 15775 mRNA_7407 0.70 -0.3
203,873 + 15775 mRNA_7407 0.72 +0.6
204,327 - -0.1
204,397 - -0.4
204,599 + +0.6
205,274 + 15776 mRNA_7408 0.18 +0.5
205,440 - 15776 mRNA_7408 0.23 +0.1
205,741 + 15776 mRNA_7408 0.32 -1.2
206,449 + 15776 mRNA_7408 0.54 +0.2
206,740 + 15776 mRNA_7408 0.63 +0.2
206,845 - 15776 mRNA_7408 0.66 +0.3
206,962 - 15776 mRNA_7408 0.70 -0.3
207,115 - 15776 mRNA_7408 0.74 -1.1
207,124 + 15776 mRNA_7408 0.75 -0.1
207,259 - 15776 mRNA_7408 0.79 +0.1
207,303 + 15776 mRNA_7408 0.80 -0.0
207,407 - 15776 mRNA_7408 0.83 +1.1
207,540 - 15776 mRNA_7408 0.87 -0.7
207,590 + 15776 mRNA_7408 0.89 -0.1
207,638 - -0.0
207,703 - -1.1
207,867 - +0.6
207,869 + +2.3
208,014 - -0.8

Or see this region's nucleotide sequence