Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7410

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15777 and 15778 are separated by 162 nucleotides15778 and 15779 are separated by 540 nucleotides mRNA_7409: 15777 - HMMPfam-Nucleoporin subcomplex protein binding to Pom34-PF10487, at 208,136 to 214,432 15777 mRNA_7410: 15778 - BLAST capsular associated protein [Coprinopsis cinerea ..., at 214,595 to 216,194 15778 mRNA_7411: 15779 - K02537 MAD2 mitotic spindle assembly checkpoint protein MAD2, at 216,735 to 217,924 15779

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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213,953 - +0.4
213,980 + +0.7
214,103 + +0.6
214,231 - +0.7
214,384 - -0.1
214,388 + -0.8
214,411 + +1.0
214,516 - +0.5
214,528 - +0.7
214,668 - -1.5
214,699 - +0.4
214,812 - 15778 mRNA_7410 0.14 -1.4
214,814 + 15778 mRNA_7410 0.14 +1.0
214,980 - 15778 mRNA_7410 0.24 +0.4
215,001 - 15778 mRNA_7410 0.25 +0.1
215,007 - 15778 mRNA_7410 0.26 +0.5
215,025 + 15778 mRNA_7410 0.27 -2.0
215,130 + 15778 mRNA_7410 0.33 -1.2
215,195 + 15778 mRNA_7410 0.38 -0.3
216,276 - +0.9
216,304 - -0.1
216,314 - -1.2
216,325 + +1.0
216,442 - -0.5
216,610 + -1.0
216,758 - -0.6
217,036 + 15779 mRNA_7411 0.25 +0.1
217,053 + 15779 mRNA_7411 0.27 +0.3

Or see this region's nucleotide sequence