Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7422

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15789 and 15790 are separated by 417 nucleotides15790 and 15791 are separated by 753 nucleotides mRNA_7421: 15789 - Hypothetical Protein, at 237,711 to 239,043 15789 mRNA_7422: 15790 - Hypothetical Protein, at 239,461 to 241,066 15790 mRNA_7423: 15791 - K01568 PDC, pdc pyruvate decarboxylase, at 241,820 to 244,654 15791

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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238,516 + 15789 mRNA_7421 0.60 -0.5
239,685 - 15790 mRNA_7422 0.14 +0.2
239,886 - 15790 mRNA_7422 0.26 +1.4
240,368 - 15790 mRNA_7422 0.56 -0.6
240,536 - 15790 mRNA_7422 0.67 -0.1
240,642 + 15790 mRNA_7422 0.74 +0.4
241,077 - +0.1
241,162 - -0.7
241,197 + +1.4
241,211 - +0.1
241,365 + -1.6
241,485 - +0.1
241,526 + +0.0
241,581 - -0.6
241,581 - +1.7
241,642 + -1.1
241,648 - -0.9
241,656 - +1.6
241,666 + -1.7
241,669 - -0.8
241,675 + +0.7
241,684 + -1.1
241,687 + +2.7

Or see this region's nucleotide sequence