Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7431

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15798 and 15799 are separated by 329 nucleotides mRNA_7430: 15798 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 256,122 to 258,039 15798 mRNA_7431: 15799 - K12396 AP3D AP-3 complex subunit delta, at 258,369 to 261,553 15799

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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257,594 + 15798 mRNA_7430 0.77 +2.3
257,756 + 15798 mRNA_7430 0.85 -0.7
258,072 + -0.5
258,183 - -0.6
258,490 - +1.8
259,217 - 15799 mRNA_7431 0.27 -0.3
259,681 + 15799 mRNA_7431 0.41 +0.5
260,835 - 15799 mRNA_7431 0.77 +0.2
261,168 + 15799 mRNA_7431 0.88 +0.2
261,444 + +0.9
261,577 - +1.6
261,603 - -0.1
261,609 + -1.3
261,622 + +0.1
261,636 + -0.8

Or see this region's nucleotide sequence