Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7456

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15823 and 15824 are separated by 355 nucleotides mRNA_7455: 15823 - KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17, at 315,184 to 315,974 15823 mRNA_7456: 15824 - Hypothetical Protein, at 316,330 to 316,788 15824

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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315,827 + 15823 mRNA_7455 0.81 -0.9
315,848 + 15823 mRNA_7455 0.84 -0.4
315,980 + +0.0
316,268 + +0.9
316,398 + 15824 mRNA_7456 0.15 +0.5
316,415 + 15824 mRNA_7456 0.19 -0.1
316,555 + 15824 mRNA_7456 0.49 +0.7
316,560 - 15824 mRNA_7456 0.50 +0.3
316,646 - 15824 mRNA_7456 0.69 +2.3
316,685 - 15824 mRNA_7456 0.77 +0.3
316,686 - 15824 mRNA_7456 0.78 +0.2
316,720 - 15824 mRNA_7456 0.85 +0.9
316,839 - +2.8
316,859 + +0.5
316,867 + +0.3
316,907 + -0.1
316,930 + +0.2
316,937 - -2.1
316,944 + +2.1
316,959 + -0.3
316,976 + +0.8
316,979 - +2.4
316,989 + -0.4
316,989 + +0.2
317,003 + -1.3
317,005 - +0.1
317,074 + -0.2
317,191 - +0.8
317,265 + +0.1
317,286 + +0.0
317,286 - +0.3
317,300 + +0.5
317,383 - -1.3
317,405 - -1.1
317,410 + +1.6
317,410 + +0.2
317,430 + +0.9
317,438 + +0.4
317,455 - +1.5
317,466 - +1.5
317,466 + +0.1
317,491 - -0.3
317,521 - -0.8
317,551 - +0.5
317,571 - +0.5
317,608 - +1.2
317,612 + +1.7
317,612 + +0.1
317,615 - +2.2
317,621 + +1.0
317,621 - +0.1
317,621 - -3.9
317,626 + -0.6
317,627 - -0.6
317,628 + -1.1
317,628 + +1.3
317,631 - +0.6
317,633 + -0.4
317,643 - -0.2
317,649 + +1.7
317,651 + -0.3
317,652 + +1.0
317,661 + +0.3
317,670 - +0.7
317,721 - +0.4

Or see this region's nucleotide sequence