Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7462

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15829 and 15830 are separated by 343 nucleotides15830 and 15831 are separated by 800 nucleotides mRNA_7461: 15829 - K08964 mtnB methylthioribulose-1-phosphate dehydratase, at 332,906 to 334,515 15829 mRNA_7462: 15830 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 334,859 to 336,377 15830 mRNA_7463: 15831 - Hypothetical Protein, at 337,178 to 338,673 15831

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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334,195 - 15829 mRNA_7461 0.80 +0.7
334,323 - 15829 mRNA_7461 0.88 +1.4
334,501 - +0.5
334,605 + -0.6
334,605 + +0.4
334,608 + -1.5
334,624 + +1.2
334,758 - +0.6
334,765 + -0.4
334,771 - -0.8
335,364 + 15830 mRNA_7462 0.33 +0.3
335,382 + 15830 mRNA_7462 0.34 -0.5
335,503 - 15830 mRNA_7462 0.42 -1.2
335,504 + 15830 mRNA_7462 0.42 +0.9
335,509 + 15830 mRNA_7462 0.43 +0.5
335,797 - 15830 mRNA_7462 0.62 +0.7
335,801 - 15830 mRNA_7462 0.62 +1.7
335,950 - 15830 mRNA_7462 0.72 +0.1
336,094 - 15830 mRNA_7462 0.81 -0.0
336,103 + 15830 mRNA_7462 0.82 +0.0
336,241 - +0.4
336,506 - +1.7
336,523 + -1.1
336,972 - -0.2
336,978 - -0.4
336,982 + -1.2
336,983 + +2.6
336,994 + -0.2
336,994 + +0.1
336,994 + -0.4
337,004 - +0.3
337,007 + -0.1
337,011 + +0.5
337,020 + +0.7
337,048 + +0.9
337,151 - +0.4
337,230 + -3.8

Or see this region's nucleotide sequence