Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7476

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15844 and 15845 are separated by 366 nucleotides mRNA_7476: 15844 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 378,155 to 380,112 15844 mRNA_7477: 15845 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 380,479 to 382,307 15845

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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377,454 - +0.4
377,484 - -1.3
377,494 - -1.2
377,508 + -1.0
377,512 - +1.2
377,589 - -0.6
377,593 + -1.1
377,706 - +1.6
377,712 - -0.8
377,715 - -0.5
377,716 + -0.5
377,725 + -0.5
377,728 + -0.8
377,744 + -0.4
377,751 - -0.3
377,769 + +0.0
377,771 + -0.2
377,790 - +0.5
377,911 - +0.1
377,912 - -0.7
377,912 + +1.4
377,930 - +0.2
378,054 + -0.4
378,062 + -1.6
378,068 - +0.2
378,072 + -2.1
378,074 - +0.3
378,076 - -0.1
378,104 + +0.8
378,217 + -0.9
378,225 + -0.1
378,367 - 15844 mRNA_7476 0.11 -1.1
378,407 + 15844 mRNA_7476 0.13 -0.8
378,541 + 15844 mRNA_7476 0.20 +1.3
378,552 - 15844 mRNA_7476 0.20 -1.7
379,032 - 15844 mRNA_7476 0.45 -1.0
379,244 + 15844 mRNA_7476 0.56 -0.1
379,433 + 15844 mRNA_7476 0.65 -0.3
379,787 - 15844 mRNA_7476 0.83 -1.9
380,000 + +0.0
380,087 + -0.4
380,093 - -0.3
380,119 + -0.4
380,140 - +0.3
380,234 + +0.2
380,235 - +1.2
380,235 + -0.2
380,236 + +0.2
380,356 + +0.0
380,359 + +0.2
380,370 - -0.7
380,384 + -0.4
380,408 - -0.0
380,415 - -0.9
380,420 - +0.7
380,422 - -1.6
380,442 + -1.1
380,546 + -0.0
380,582 - +0.0
380,588 - -0.9
380,589 + -1.3
380,590 + -2.0
380,592 + -0.5
380,601 + -1.0
380,618 + -0.6
380,705 + 15845 mRNA_7477 0.12 -0.9
380,705 - 15845 mRNA_7477 0.12 -1.0
380,719 + 15845 mRNA_7477 0.13 -0.3
380,724 + 15845 mRNA_7477 0.13 -0.5
380,732 - 15845 mRNA_7477 0.14 -0.4
380,734 - 15845 mRNA_7477 0.14 +0.5
380,735 - 15845 mRNA_7477 0.14 -0.2
380,737 - 15845 mRNA_7477 0.14 -0.1
380,740 + 15845 mRNA_7477 0.14 +0.9
380,743 + 15845 mRNA_7477 0.14 -2.0
380,746 - 15845 mRNA_7477 0.15 -0.6
380,752 + 15845 mRNA_7477 0.15 -2.2
380,756 + 15845 mRNA_7477 0.15 -0.6
380,758 + 15845 mRNA_7477 0.15 +0.6
380,759 + 15845 mRNA_7477 0.15 -0.7
380,769 - 15845 mRNA_7477 0.16 -0.8
380,881 + 15845 mRNA_7477 0.22 -0.4
380,884 + 15845 mRNA_7477 0.22 -0.2
380,889 - 15845 mRNA_7477 0.22 +0.4
380,912 - 15845 mRNA_7477 0.24 -0.7
381,022 - 15845 mRNA_7477 0.30 +0.1

Or see this region's nucleotide sequence