Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7487

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15854 and 15855 are separated by 738 nucleotides mRNA_7486: 15854 - K08287 E2.7.12.1 dual-specificity kinase, at 397,692 to 399,920 15854 mRNA_7487: 15855 - K17619 MDP1 magnesium-dependent phosphatase 1, at 400,659 to 401,356 15855

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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399,743 + -2.5
399,895 + +0.4
399,911 - -2.3
399,912 + -1.3
400,050 - -0.3
400,064 + +1.0
400,070 - +0.3
400,190 - -0.7
400,209 - +1.1
400,211 - +0.3
400,218 + +0.4
400,219 + +0.3
400,225 - +0.7
400,229 - -0.3
400,230 + +0.8
400,230 + +0.2
400,238 + +1.0
400,508 - +2.1
400,667 + +0.9
401,283 + 15855 mRNA_7487 0.89 +0.2
401,372 + +0.5
401,519 + +0.5
401,532 - +0.5
401,537 - +0.6
401,538 - +0.8
401,546 - +1.4
401,677 + +0.3
401,684 - -1.3
401,690 - +3.2
402,141 - +0.1
402,149 + +0.6
402,154 + -0.1
402,160 - +0.4

Or see this region's nucleotide sequence