Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7489

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15856 and 15857 are separated by 148 nucleotides15857 and 15858 are separated by 87 nucleotides mRNA_7488: 15856 - K00558 DNMT1, dcm DNA (cytosine-5)-methyltransferase 1, at 403,840 to 407,882 15856 mRNA_7489: 15857 - K12351 SMPD2 sphingomyelin phosphodiesterase 2, at 408,031 to 409,638 15857 mRNA_7490: 15858 - K20167 TBC1D14 TBC1 domain family member 14, at 409,726 to 411,732 15858

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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407,117 + 15856 mRNA_7488 0.81 +0.8
407,162 + 15856 mRNA_7488 0.82 +1.7
407,556 - +0.2
407,566 - +0.1
407,856 - +0.2
407,902 - -0.1
408,016 + -0.0
408,330 + 15857 mRNA_7489 0.19 +0.4
408,409 - 15857 mRNA_7489 0.24 -0.6
408,438 - 15857 mRNA_7489 0.25 +0.4
408,462 - 15857 mRNA_7489 0.27 -0.4
408,908 - 15857 mRNA_7489 0.55 -1.4
409,011 - 15857 mRNA_7489 0.61 -0.8
409,089 + 15857 mRNA_7489 0.66 -1.2
409,231 + 15857 mRNA_7489 0.75 +1.1
409,386 - 15857 mRNA_7489 0.84 -0.2
409,501 + -0.8
409,502 + -0.2
409,503 - +0.9
409,507 - -1.3
409,653 - -1.1
409,665 - -0.1
409,669 - +0.3
409,669 + +3.1
409,772 + +0.8
409,803 - +2.1
409,954 + 15858 mRNA_7490 0.11 -0.4
410,091 - 15858 mRNA_7490 0.18 -1.6
410,124 - 15858 mRNA_7490 0.20 +1.6
410,276 + 15858 mRNA_7490 0.27 +0.6

Or see this region's nucleotide sequence