Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7588

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15955 and 15956 are separated by 206 nucleotides15956 and 15957 are separated by 192 nucleotides mRNA_7587: 15955 - HMMPfam-Protein of unknown function (DUF2413)-PF10310, at 621,699 to 623,748 15955 mRNA_7588: 15956 - Hypothetical Protein, at 623,955 to 629,387 15956 mRNA_7589: 15957 - K19785 POF1 nicotinamide-nucleotide adenylyltransferase, at 629,580 to 630,504 15957

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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622,995 - 15955 mRNA_7587 0.63 +1.8
623,063 + 15955 mRNA_7587 0.67 +2.4
623,379 + 15955 mRNA_7587 0.82 +0.3
623,576 + +0.4
623,878 - -2.0
623,894 + -0.1
624,632 - 15956 mRNA_7588 0.12 -0.5
627,593 + 15956 mRNA_7588 0.67 +1.0
627,603 + 15956 mRNA_7588 0.67 -0.4
628,019 - 15956 mRNA_7588 0.75 -1.1
628,322 + 15956 mRNA_7588 0.80 +0.3
628,663 - 15956 mRNA_7588 0.87 +1.5
629,203 - +0.8
629,210 - -1.7
629,211 + -1.1
629,339 + -0.3
629,361 + +0.6
629,636 - +0.7
629,776 - 15957 mRNA_7589 0.21 -0.0
629,776 + 15957 mRNA_7589 0.21 +1.4
629,783 - 15957 mRNA_7589 0.22 +0.4
629,791 + 15957 mRNA_7589 0.23 +0.3
629,798 + 15957 mRNA_7589 0.24 +0.2
629,800 + 15957 mRNA_7589 0.24 +1.9
629,919 - 15957 mRNA_7589 0.37 +0.0
630,363 - 15957 mRNA_7589 0.85 -0.6

Or see this region's nucleotide sequence