Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7607

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15974 and 15975 are separated by 244 nucleotides15975 and 15976 are separated by 276 nucleotides mRNA_7606: 15974 - Hypothetical Protein, at 664,256 to 665,164 15974 mRNA_7607: 15975 - BLAST UPF0428 CXorf56-like protein, putative [Rhizoctonia s..., at 665,409 to 666,288 15975 mRNA_7608: 15976 - K10847 XPA DNA-repair protein complementing XP-A cells, at 666,565 to 667,853 15976

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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664,494 + 15974 mRNA_7606 0.26 +0.6
664,497 + 15974 mRNA_7606 0.27 +0.2
664,795 - 15974 mRNA_7606 0.59 -0.1
664,926 + 15974 mRNA_7606 0.74 -0.1
665,086 - -0.3
665,222 - +0.6
665,362 - +1.3
665,362 - +0.0
665,375 + +0.1
665,396 - +0.5
665,511 + 15975 mRNA_7607 0.12 +0.7
665,519 - 15975 mRNA_7607 0.12 +0.9
665,541 - 15975 mRNA_7607 0.15 +2.0
665,546 + 15975 mRNA_7607 0.16 +0.8
665,668 + 15975 mRNA_7607 0.29 -1.6
665,673 - 15975 mRNA_7607 0.30 -0.3
665,679 + 15975 mRNA_7607 0.31 +0.7
665,685 + 15975 mRNA_7607 0.31 +0.3
665,834 - 15975 mRNA_7607 0.48 +1.3
666,224 - +0.2
666,667 - -0.7
666,668 + -2.0
666,675 + -1.9
666,676 + -1.2
666,678 + +1.4
666,708 - 15976 mRNA_7608 0.11 -0.2
666,841 + 15976 mRNA_7608 0.21 -0.4
667,141 + 15976 mRNA_7608 0.45 -0.1
667,180 + 15976 mRNA_7608 0.48 +0.3

Or see this region's nucleotide sequence