Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7625

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15992 and 15993 are separated by 177 nucleotides15993 and 15994 are separated by 469 nucleotides mRNA_7624: 15992 - KOG1535 Predicted fumarylacetoacetate hydralase, at 706,730 to 707,973 15992 mRNA_7625: 15993 - HMMPfam-Hypoxia induced protein conserved region-PF04588,ProSiteProfiles-HIG1 domain profile.-PS51503, at 708,151 to 709,093 15993 mRNA_7626: 15994 - K00273 DAO, aao D-amino-acid oxidase, at 709,563 to 711,029 15994

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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707,152 + 15992 mRNA_7624 0.34 +0.7
707,158 + 15992 mRNA_7624 0.34 -0.7
707,250 + 15992 mRNA_7624 0.42 -0.3
707,278 + 15992 mRNA_7624 0.44 -0.6
707,406 + 15992 mRNA_7624 0.54 +0.6
707,724 + 15992 mRNA_7624 0.80 -0.4
707,785 - 15992 mRNA_7624 0.85 +0.0
707,837 + 15992 mRNA_7624 0.89 -0.5
707,848 - 15992 mRNA_7624 0.90 -0.5
707,905 + +1.0
707,980 - +0.2
707,994 - +0.4
707,996 + +1.5
707,997 + +0.7
708,002 - +0.6
708,026 - -1.4
708,057 - +0.0
708,130 - -0.3
708,135 + -0.6
708,136 - +0.4
708,465 + 15993 mRNA_7625 0.33 -0.3
708,581 + 15993 mRNA_7625 0.46 -2.2
708,689 + 15993 mRNA_7625 0.57 -1.6
708,757 - 15993 mRNA_7625 0.64 +0.6
708,849 - 15993 mRNA_7625 0.74 -0.1
708,853 - 15993 mRNA_7625 0.74 -0.6
708,869 - 15993 mRNA_7625 0.76 +0.3
708,883 - 15993 mRNA_7625 0.78 -0.3
708,895 + 15993 mRNA_7625 0.79 -1.1
708,898 + 15993 mRNA_7625 0.79 +0.3
709,030 - +0.9
709,140 - -0.1
709,146 - -1.0
709,153 - +0.6
709,167 - +2.1
709,167 + +0.3
709,178 - -0.1
709,191 + -0.4
709,203 + -0.5
709,204 + -1.2
709,206 + -3.6
709,223 + -0.4
709,232 - +0.2
709,235 - -0.4
709,235 - -0.8
709,236 + -1.8
709,238 + +1.4
709,238 + +1.8
709,240 + -0.6
709,242 + -0.2
709,249 - +0.2
709,257 - +0.4
709,319 - -0.9
709,319 + -0.7
709,325 - +0.7
709,343 + -0.1
709,473 + -0.9
709,489 + +0.6
709,491 - +0.1
709,492 - +0.8
709,492 - -0.2
709,498 + +1.3
709,801 - 15994 mRNA_7626 0.16 +0.1

Or see this region's nucleotide sequence