Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7636

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16003 and 16004 are separated by 945 nucleotides16004 and 16005 are separated by 106 nucleotides mRNA_7635: 16003 - K02865 RP-L10Ae, RPL10A large subunit ribosomal protein L10Ae, at 735,814 to 737,148 16003 mRNA_7636: 16004 - Hypothetical Protein, at 738,094 to 740,941 16004 mRNA_7637: 16005 - K12197 CHMP1, VPS46, DID2 charged multivesicular body protein 1, at 741,048 to 741,985 16005

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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737,389 + +0.1
737,500 - +0.0
737,509 + +0.3
737,510 - +0.6
737,512 + -0.4
737,525 + +0.3
737,530 - +0.7
737,538 + +0.2
737,671 - -0.7
737,673 + -0.4
737,680 - -1.4
737,687 + +1.5
737,827 - +1.0
737,942 + -0.0
738,084 - +1.2
738,247 - -0.0
738,546 + 16004 mRNA_7636 0.16 +1.0
738,933 + 16004 mRNA_7636 0.29 -1.3
738,954 + 16004 mRNA_7636 0.30 +0.3
739,020 - 16004 mRNA_7636 0.33 +0.3
739,118 + 16004 mRNA_7636 0.36 +3.1
739,132 - 16004 mRNA_7636 0.36 -0.0
739,577 + 16004 mRNA_7636 0.52 +1.1
739,729 + 16004 mRNA_7636 0.57 +0.7
739,808 - 16004 mRNA_7636 0.60 +0.2
739,840 - 16004 mRNA_7636 0.61 -0.3
739,858 - 16004 mRNA_7636 0.62 +0.6
739,871 + 16004 mRNA_7636 0.62 -0.0
739,994 + 16004 mRNA_7636 0.67 -1.1
740,253 + 16004 mRNA_7636 0.76 +0.4
740,560 + 16004 mRNA_7636 0.87 -2.1
740,857 + -0.5
740,880 - +0.2
741,183 + 16005 mRNA_7637 0.14 -2.1

Or see this region's nucleotide sequence