Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7658

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16025 and 16026 are separated by 170 nucleotides16026 and 16027 are separated by 94 nucleotides mRNA_7657: 16025 - KOG2743 Cobalamin synthesis protein, at 781,222 to 782,891 16025 mRNA_7658: 16026 - KOG1398 Uncharacterized conserved protein, at 783,062 to 785,466 16026 mRNA_7659: 16027 - BLAST acetylornithine transaminase [Moesziomyces antarc..., at 785,561 to 786,043 16027

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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782,462 - 16025 mRNA_7657 0.74 +1.9
782,911 - +0.7
783,298 + -1.2
783,563 + 16026 mRNA_7658 0.21 -0.3
783,619 - 16026 mRNA_7658 0.23 +0.5
783,766 - 16026 mRNA_7658 0.29 +0.4
783,956 + 16026 mRNA_7658 0.37 +2.1
784,236 + 16026 mRNA_7658 0.49 -0.1
784,648 - 16026 mRNA_7658 0.66 -0.4
784,902 - 16026 mRNA_7658 0.77 -0.4
785,080 + 16026 mRNA_7658 0.84 -0.3
785,080 + 16026 mRNA_7658 0.84 +0.1
785,096 - 16026 mRNA_7658 0.85 +0.9
785,189 - 16026 mRNA_7658 0.88 +0.8
785,223 - 16026 mRNA_7658 0.90 +1.0
785,369 + -3.1
785,371 + -0.4
785,376 + +1.2
785,380 - +0.2
785,382 - +0.3
785,525 + -0.3
785,540 - -1.0
785,542 + -0.1
785,562 + -0.8
785,692 - 16027 mRNA_7659 0.27 -4.0
785,842 - 16027 mRNA_7659 0.58 -3.5
785,968 - 16027 mRNA_7659 0.84 +1.3
786,118 - +0.6
786,245 - +0.7
786,265 + -2.2
786,292 + +0.2
786,337 - -0.4

Or see this region's nucleotide sequence