Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7663

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16030 and 16031 are separated by 455 nucleotides mRNA_7662: 16030 - K13519 LPT1, ALE1 lysophospholipid acyltransferase, at 788,706 to 790,925 16030 mRNA_7663: 16031 - K03305 TC.POT proton-dependent oligopeptide transporter, POT family, at 791,381 to 793,587 16031

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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790,402 - 16030 mRNA_7662 0.76 -1.8
790,975 - -0.8
790,988 - +0.1
790,990 + +1.6
790,993 - +0.1
790,995 - -0.4
791,015 - +0.6
791,036 + -1.1
791,092 - +0.9
791,131 - -1.4
791,133 + -0.3
791,151 + +0.2
791,156 + +0.7
791,193 - +1.0
791,199 - +2.2
791,212 + -0.1
791,286 + -0.6
791,290 - +1.4
791,295 + -0.4
791,295 + +0.1
791,312 + +0.0
791,315 - +0.7
791,335 - -0.1
791,339 - -0.5
791,431 + +0.5
791,444 + +0.1
791,446 + -0.6
791,447 - -0.3
791,475 + -0.2
791,760 + 16031 mRNA_7663 0.17 -5.5
791,851 + 16031 mRNA_7663 0.21 -3.4
791,990 - 16031 mRNA_7663 0.28 -0.5
792,109 + 16031 mRNA_7663 0.33 -0.9
792,184 + 16031 mRNA_7663 0.36 +0.7
792,554 + 16031 mRNA_7663 0.53 -0.9
792,903 - 16031 mRNA_7663 0.69 +0.6
793,070 + 16031 mRNA_7663 0.77 +2.3
793,071 - 16031 mRNA_7663 0.77 -0.8
793,126 - 16031 mRNA_7663 0.79 -0.4
793,222 + 16031 mRNA_7663 0.83 -1.1
793,297 - 16031 mRNA_7663 0.87 -2.2
793,402 - -0.6
793,452 + +0.5
793,610 + +0.1
793,657 - -1.1
793,690 - +0.0
793,709 - -1.2
793,759 - -0.6
793,769 + -1.8
793,774 - +0.3
793,787 - +1.9
793,795 - +0.9
793,832 + -1.3
793,917 + +0.5
793,919 - -0.8
793,929 + +0.7
793,930 - -1.0
793,936 + +0.6
793,936 - -0.0
793,939 + +0.0
793,940 + +0.5
793,941 + +0.0
793,941 + -2.3
793,948 - -0.9
793,955 - -0.5
793,957 - -0.6
793,960 + -0.4
793,963 - -1.2
793,968 - -0.0
793,977 - -1.9
793,994 + -0.8
794,005 + -1.1
794,006 - +1.8
794,008 - -0.3
794,009 + -1.0
794,034 + -0.6
794,035 + -0.6
794,037 + +1.5
794,053 + -0.4
794,058 + -0.1
794,071 - -0.3
794,074 + +0.4
794,077 - +0.9
794,078 + -0.9
794,081 + +0.6
794,082 + -0.2
794,093 - +0.7
794,096 - +0.6
794,098 - -0.3
794,104 + +1.4
794,105 - +0.2
794,115 + +0.6
794,117 + -0.8
794,122 - +0.9
794,122 - +0.8
794,123 - +0.3
794,127 - -1.3
794,130 + +0.3
794,134 + -0.3
794,135 - -0.5
794,136 - +1.1
794,138 + +0.7
794,141 + +1.7
794,152 - +0.7
794,155 + -2.1
794,161 + -0.4
794,162 - -1.4
794,164 - +1.0
794,164 - -0.5
794,165 - +0.9
794,167 - +0.3
794,168 + +0.7
794,174 + -2.8
794,175 + +0.0
794,177 - -0.4
794,177 + +0.1
794,179 - -0.1
794,180 - +0.7
794,180 - +0.3
794,182 + +0.4
794,184 + +0.6
794,185 + +0.6
794,185 - +1.7
794,186 + +0.3
794,187 - +1.2
794,187 - +0.0
794,202 - +0.3
794,203 + +0.1
794,203 + +0.4
794,203 - +0.7
794,204 + +1.1
794,206 + +0.2
794,209 + -0.2
794,210 - -0.8
794,223 - +0.4
794,227 - +0.2
794,227 + +0.1
794,229 + +0.4
794,230 - -0.0
794,233 + +0.7
794,233 - -1.0
794,236 - -3.1
794,237 + +0.5
794,238 + +2.5
794,240 - +0.6
794,245 - -0.7
794,245 - -1.7
794,248 + +0.3
794,248 - -0.7
794,252 - -0.5
794,253 - +1.0
794,259 - -0.8
794,259 + -0.8
794,261 + +1.2
794,262 + -1.2
794,265 + +0.4
794,267 - +1.6
794,278 - +1.0
794,281 - +1.2
794,283 + -0.4
794,292 + +1.3
794,372 + -1.8
794,396 + +0.3
794,418 + -0.3
794,422 + +0.1
794,427 + -0.3
794,447 + +0.4
794,453 - +2.2
794,459 + +0.8
794,496 - +0.2
794,517 - +1.6
794,521 - -0.8
794,525 + +0.9
794,529 + +0.3
794,542 - -0.9
794,555 + -1.3
794,556 + +0.3
794,558 + +0.8
794,561 - +0.9
794,563 + +1.0
794,568 + +1.0
794,575 + +0.1
794,576 - +0.5
794,578 - +0.1

Or see this region's nucleotide sequence