Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7665

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16032 and 16033 are separated by 207 nucleotides16033 and 16034 are separated by 207 nucleotides mRNA_7664: 16032 - K07904 RAB11A Ras-related protein Rab-11A, at 794,964 to 796,238 16032 mRNA_7665: 16033 - K13119 FAM50, XAP5 protein FAM50, at 796,446 to 798,090 16033 mRNA_7666: 16034 - K20184 VPS41 vacuolar protein sorting-associated protein 41, at 798,298 to 802,330 16034

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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795,574 - 16032 mRNA_7664 0.48 -4.2
796,342 + +1.9
796,352 - -0.7
796,358 - -0.1
796,359 + +0.0
796,359 - -1.1
796,367 - -0.9
796,376 + +0.1
798,243 - +2.8
798,244 - +0.8
798,247 - -0.4
798,386 - +0.6

Or see this region's nucleotide sequence