Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7682

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16049 and 16050 are separated by 244 nucleotides16050 and 16051 are separated by 265 nucleotides mRNA_7681: 16049 - Hypothetical Protein, at 826,300 to 827,705 16049 mRNA_7682: 16050 - Hypothetical Protein, at 827,950 to 829,213 16050 mRNA_7683: 16051 - K02542 MCM6 DNA replication licensing factor MCM6, at 829,479 to 832,868 16051

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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827,060 + 16049 mRNA_7681 0.54 -0.8
827,130 - 16049 mRNA_7681 0.59 -0.2
827,672 - +0.4
827,730 + -0.4
827,800 - +2.7
827,907 - +0.0
828,245 + 16050 mRNA_7682 0.23 +1.1
828,287 + 16050 mRNA_7682 0.27 -0.7
828,386 + 16050 mRNA_7682 0.34 -1.0
828,405 + 16050 mRNA_7682 0.36 +0.4
828,435 + 16050 mRNA_7682 0.38 +1.7
828,819 - 16050 mRNA_7682 0.69 -0.7
828,834 + 16050 mRNA_7682 0.70 -0.9
829,036 + 16050 mRNA_7682 0.86 -2.0
829,131 - -0.6
830,112 - 16051 mRNA_7683 0.19 +2.9

Or see this region's nucleotide sequence