Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7684

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16051 and 16052 are separated by 191 nucleotides16052 and 16053 are separated by 742 nucleotides mRNA_7683: 16051 - K02542 MCM6 DNA replication licensing factor MCM6, at 829,479 to 832,868 16051 mRNA_7684: 16052 - Hypothetical Protein, at 833,060 to 834,277 16052 mRNA_7685: 16053 - Hypothetical Protein, at 835,020 to 835,589 16053

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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832,925 + +0.6
832,958 + +2.3
832,970 - -0.8
832,972 + -1.5
833,203 + 16052 mRNA_7684 0.12 +1.3
833,401 + 16052 mRNA_7684 0.28 +1.2
833,503 + 16052 mRNA_7684 0.36 +2.5
833,849 - 16052 mRNA_7684 0.65 -1.0
833,902 - 16052 mRNA_7684 0.69 -2.0
833,943 + 16052 mRNA_7684 0.72 -0.7
833,961 + 16052 mRNA_7684 0.74 -0.3
834,101 - 16052 mRNA_7684 0.85 -0.2
834,277 + +0.5
834,837 - -0.4
834,847 + -1.6
835,023 + +1.4
835,125 + 16053 mRNA_7685 0.18 -0.0
835,229 + 16053 mRNA_7685 0.37 -1.3
835,232 - 16053 mRNA_7685 0.37 +0.9

Or see this region's nucleotide sequence