Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7720

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16087 and 16088 are separated by 83 nucleotides16088 and 16089 are separated by 112 nucleotides mRNA_7719: 16087 - Hypothetical Protein, at 921,427 to 923,879 16087 mRNA_7720: 16088 - K03177 truB, PUS4, TRUB1 tRNA pseudouridine55 synthase, at 923,963 to 925,405 16088 mRNA_7721: 16089 - K19998 SCFD1, SLY1 sec1 family domain-containing protein 1, at 925,518 to 928,664 16089

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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922,975 + 16087 mRNA_7719 0.63 -0.1
923,540 - 16087 mRNA_7719 0.86 -1.7
923,541 + 16087 mRNA_7719 0.86 +0.4
923,544 - 16087 mRNA_7719 0.86 -0.4
923,551 - 16087 mRNA_7719 0.87 -0.1
923,554 + 16087 mRNA_7719 0.87 -0.2
923,821 - +2.6
923,832 + +0.0
923,864 + -2.0
923,980 + +1.5
924,382 - 16088 mRNA_7720 0.29 -0.6
924,393 - 16088 mRNA_7720 0.30 +0.1
924,571 + 16088 mRNA_7720 0.42 -0.0
924,668 - 16088 mRNA_7720 0.49 +0.2
924,678 + 16088 mRNA_7720 0.50 +0.4
924,716 - 16088 mRNA_7720 0.52 +0.7
924,846 - 16088 mRNA_7720 0.61 -0.3
924,869 - 16088 mRNA_7720 0.63 +2.2
925,050 - 16088 mRNA_7720 0.75 -0.3
925,349 + +0.0
925,431 - -0.2
925,459 + +2.8

Or see this region's nucleotide sequence