Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7724

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16091 and 16092 are separated by 246 nucleotides16092 and 16093 are separated by 408 nucleotides mRNA_7723: 16091 - HMMPfam-Domain of unknown function (DUF427)-PF04248, at 931,116 to 931,814 16091 mRNA_7724: 16092 - KOG2644 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes, at 932,061 to 933,452 16092 mRNA_7725: 16093 - Hypothetical Protein, at 933,861 to 936,370 16093

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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931,144 - +1.2
931,282 + 16091 mRNA_7723 0.24 -1.1
931,309 - 16091 mRNA_7723 0.28 +2.0
931,314 + 16091 mRNA_7723 0.28 -0.2
931,640 - 16091 mRNA_7723 0.75 +0.1
931,754 + +0.6
931,763 + +0.4
931,773 + -0.1
931,810 + -1.2
931,905 - -0.9
931,944 - +1.1
932,104 + -0.9
932,107 - +0.0
932,228 + 16092 mRNA_7724 0.12 -0.3
932,263 + 16092 mRNA_7724 0.15 -0.4
932,339 + 16092 mRNA_7724 0.20 +1.4
932,377 - 16092 mRNA_7724 0.23 +0.1
932,500 + 16092 mRNA_7724 0.32 -1.3
932,542 - 16092 mRNA_7724 0.35 +2.2
932,542 + 16092 mRNA_7724 0.35 +0.4
932,776 - 16092 mRNA_7724 0.51 -0.4
933,038 - 16092 mRNA_7724 0.70 +0.5
933,068 - 16092 mRNA_7724 0.72 +0.1
933,307 - 16092 mRNA_7724 0.90 -0.5
933,356 - +0.4
933,363 + +0.9
933,369 + +0.4
933,375 + +0.5
933,489 - +0.3
933,505 - +0.6
933,512 + +0.3
933,512 - +0.6
933,521 + +2.2
933,523 + -0.0
933,531 - -0.0
933,536 + +0.1
933,649 + +1.1
933,673 - +1.0
933,686 + -2.3
933,704 + +0.4
933,863 + -1.9
934,103 + -1.0

Or see this region's nucleotide sequence