Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7733

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16100 and 16101 are separated by 682 nucleotides16101 and 16102 are separated by 929 nucleotides mRNA_7732: 16100 - Hypothetical Protein, at 949,137 to 950,100 16100 mRNA_7733: 16101 - HMMPfam-DinB superfamily-PF12867, at 950,783 to 951,558 16101 mRNA_7734: 16102 - Hypothetical Protein, at 952,488 to 953,987 16102

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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949,833 + 16100 mRNA_7732 0.72 -0.1
949,915 + 16100 mRNA_7732 0.81 -0.2
949,969 + 16100 mRNA_7732 0.86 +0.6
950,230 + -0.9
950,231 - -0.6
950,244 - +1.8
950,249 - -0.2
950,252 + -0.3
950,390 - +1.8
950,394 - -1.4
950,436 + -1.7
950,514 - +0.6
950,539 + -0.3
950,539 + +0.3
950,560 - +0.4
950,560 - +0.7
950,561 - +0.3
950,561 - -0.7
950,571 + +1.8
950,582 - -0.3
950,840 + +1.8
950,851 + +0.5
950,855 - -0.6
950,867 - 16101 mRNA_7733 0.11 -1.7
950,994 + 16101 mRNA_7733 0.27 +1.3
951,014 + 16101 mRNA_7733 0.30 +0.6
951,587 + -0.6
951,829 - +0.5
951,859 + -0.1

Or see this region's nucleotide sequence