Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7763

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16130 and 16131 are separated by 225 nucleotides16131 and 16132 are separated by 870 nucleotides mRNA_7762: 16130 - K20302 TRAPPC3, BET3 trafficking protein particle complex subunit 3, at 1,009,645 to 1,010,524 16130 mRNA_7763: 16131 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 1,010,750 to 1,013,184 16131 mRNA_7764: 16132 - Hypothetical Protein, at 1,014,055 to 1,015,066 16132

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,009,912 - 16130 mRNA_7762 0.30 -3.7
1,010,669 - +0.5
1,010,669 - +0.7
1,010,700 - +0.5
1,010,820 - +0.3
1,010,834 - +1.4
1,010,996 + 16131 mRNA_7763 0.10 -0.7
1,011,002 + 16131 mRNA_7763 0.10 +0.5
1,011,041 + 16131 mRNA_7763 0.12 +0.6
1,011,041 + 16131 mRNA_7763 0.12 -0.1
1,011,260 - 16131 mRNA_7763 0.21 +0.5
1,011,267 + 16131 mRNA_7763 0.21 +0.7
1,011,448 - 16131 mRNA_7763 0.29 +0.9
1,011,549 + 16131 mRNA_7763 0.33 +0.4
1,011,703 - 16131 mRNA_7763 0.39 +0.3
1,011,741 + 16131 mRNA_7763 0.41 -2.9
1,011,742 + 16131 mRNA_7763 0.41 -0.2
1,012,033 - 16131 mRNA_7763 0.53 -0.3
1,012,178 - 16131 mRNA_7763 0.59 +0.2
1,012,196 - 16131 mRNA_7763 0.59 +1.1
1,012,318 - 16131 mRNA_7763 0.64 +1.0
1,012,495 - 16131 mRNA_7763 0.72 +0.5
1,012,864 + 16131 mRNA_7763 0.87 +1.1
1,013,025 - -0.1
1,013,040 - -0.3
1,013,166 + -0.3
1,013,319 + +0.4
1,013,326 - -1.5
1,013,331 - +1.1
1,013,344 - +0.1
1,013,467 + +0.4
1,013,470 + -0.9
1,013,470 - -0.9
1,013,472 - -0.2
1,013,482 - -0.5
1,013,482 + +0.5
1,013,498 + +0.5
1,013,498 - -0.3
1,013,508 - +1.2
1,013,511 + +1.4
1,013,549 - -0.2
1,013,627 - +2.5
1,013,649 - -0.2
1,013,657 + -1.1
1,013,663 + +1.7
1,013,673 + -1.7
1,013,791 - -0.5
1,013,797 - +2.1
1,013,805 + -1.0
1,013,830 - -1.9
1,013,837 + -0.7
1,013,941 - -0.5
1,013,961 - +0.5
1,013,969 + -0.7
1,013,976 - -1.1

Or see this region's nucleotide sequence