Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7823

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16191 and 16192 are separated by 484 nucleotides mRNA_7823: 16191 - K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3, at 1,150,114 to 1,151,854 16191 mRNA_7824: 16192 - K17981 MTFP1, MTP18 mitochondrial fission process protein 1, at 1,152,339 to 1,153,268 16192

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,149,133 - -2.5
1,149,591 + +0.8
1,150,018 - -0.8
1,150,034 - -0.1
1,150,320 + 16191 mRNA_7823 0.12 +0.8
1,150,461 - 16191 mRNA_7823 0.20 +1.0
1,150,473 + 16191 mRNA_7823 0.21 -0.3
1,151,748 - +2.3
1,152,058 + +0.3
1,152,107 - +1.2
1,152,154 - -1.3
1,152,157 - -0.7
1,152,174 + +1.1
1,152,174 - +1.4
1,152,341 + -0.1
1,152,504 + 16192 mRNA_7824 0.18 +0.3
1,152,615 - 16192 mRNA_7824 0.30 +1.1
1,152,744 - 16192 mRNA_7824 0.44 -0.3
1,152,780 - 16192 mRNA_7824 0.47 +0.2

Or see this region's nucleotide sequence