Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7852

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16220 and 16221 are separated by 303 nucleotides mRNA_7852: 16220 - Hypothetical Protein, at 1,226,411 to 1,226,632 16220 mRNA_7853: 16221 - Hypothetical Protein, at 1,226,936 to 1,227,400 16221

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,225,862 + +1.2
1,226,238 - +0.1
1,226,261 - -1.8
1,226,265 + -0.3
1,226,268 + +0.9
1,226,292 + -0.2
1,226,331 - +0.5
1,226,560 - 16220 mRNA_7852 0.67 -1.4
1,226,885 - -0.5
1,226,895 + -0.6
1,226,900 + -0.4
1,227,047 + 16221 mRNA_7853 0.24 +1.7
1,227,102 - 16221 mRNA_7853 0.36 +0.2
1,227,102 - 16221 mRNA_7853 0.36 -1.1
1,227,118 - 16221 mRNA_7853 0.39 +0.9
1,227,119 - 16221 mRNA_7853 0.39 +0.3
1,227,151 - 16221 mRNA_7853 0.46 +0.4
1,227,158 - 16221 mRNA_7853 0.48 +0.0
1,227,163 - 16221 mRNA_7853 0.49 -0.6
1,227,175 - 16221 mRNA_7853 0.51 +2.3
1,227,203 + 16221 mRNA_7853 0.57 -2.3
1,227,230 - 16221 mRNA_7853 0.63 -0.4
1,227,236 + 16221 mRNA_7853 0.65 +0.2
1,227,241 + 16221 mRNA_7853 0.66 +0.6
1,227,244 - 16221 mRNA_7853 0.66 -1.3
1,227,249 - 16221 mRNA_7853 0.67 -0.7
1,227,343 + 16221 mRNA_7853 0.88 +0.6
1,227,355 - +0.4
1,227,432 - +1.7
1,227,536 - -0.2
1,227,536 + +0.2
1,227,537 + +1.2
1,227,551 - -0.3
1,227,566 - +0.7

Or see this region's nucleotide sequence