Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7861

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16228 and 16229 are separated by 320 nucleotides16229 and 16230 are separated by 356 nucleotides mRNA_7860: 16228 - HMMPfam-Diacylglycerol kinase catalytic domain-PF00781,ProSiteProfiles-DAG-kinase catalytic (DAGKc) domain profile.-PS50146,SUPERFAMILY--SSF111331, at 1,241,909 to 1,243,568 16228 mRNA_7861: 16229 - BLAST Transcriptional activator Myb [Leucoagaricus sp. SymC..., at 1,243,889 to 1,246,571 16229 mRNA_7862: 16230 - Hypothetical Protein, at 1,246,928 to 1,249,617 16230

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,242,959 - 16228 mRNA_7860 0.63 +0.1
1,242,978 - 16228 mRNA_7860 0.64 +0.8
1,243,020 - 16228 mRNA_7860 0.67 +0.3
1,243,033 - 16228 mRNA_7860 0.68 +1.0
1,243,046 + 16228 mRNA_7860 0.68 +3.1
1,243,053 + 16228 mRNA_7860 0.69 +0.9
1,243,053 - 16228 mRNA_7860 0.69 +0.4
1,243,068 - 16228 mRNA_7860 0.70 +0.0
1,243,181 - 16228 mRNA_7860 0.77 +1.3
1,243,181 - 16228 mRNA_7860 0.77 -0.4
1,243,325 - 16228 mRNA_7860 0.85 +0.6
1,243,343 - 16228 mRNA_7860 0.86 -0.8
1,243,351 + 16228 mRNA_7860 0.87 +1.7
1,243,516 - +0.3
1,243,627 + +1.0
1,243,632 - -1.1
1,243,775 + +0.0
1,243,778 + +2.3
1,243,787 - -0.1
1,243,787 - -1.8
1,243,788 - +0.6
1,243,788 + -0.3
1,243,802 - -0.8
1,243,821 + +1.5
1,243,828 - +2.8
1,243,973 + -2.4
1,243,984 + -0.5
1,244,263 + 16229 mRNA_7861 0.14 +0.2
1,244,285 + 16229 mRNA_7861 0.15 +0.4
1,244,397 - 16229 mRNA_7861 0.19 +1.8
1,244,538 - 16229 mRNA_7861 0.24 -0.0
1,244,616 - 16229 mRNA_7861 0.27 -0.1
1,244,659 - 16229 mRNA_7861 0.29 +1.3
1,245,429 + 16229 mRNA_7861 0.57 +0.4
1,246,437 - -0.5
1,246,567 - -0.9
1,246,568 + -0.9
1,246,592 + -0.2
1,246,657 + -0.8
1,246,672 - +0.1
1,246,705 + +0.9
1,246,822 + +1.4
1,246,845 + +0.2
1,246,849 + -0.6
1,246,868 + +0.0
1,247,014 - +1.9
1,247,015 - +0.3
1,247,025 - +0.5
1,247,030 + +1.3
1,247,033 + -1.0
1,247,037 + +0.6
1,247,056 - -1.1
1,247,187 + +0.6
1,247,195 + +0.1
1,247,196 - -1.3
1,247,217 + 16230 mRNA_7862 0.11 -0.2
1,247,326 + 16230 mRNA_7862 0.15 +0.4

Or see this region's nucleotide sequence