Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7918

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16285 and 16286 are separated by 194 nucleotides mRNA_7917: 16285 - K18477 RMT2 type IV protein arginine methyltransferase, at 16,350 to 18,077 16285 mRNA_7918: 16286 - K15523 FN3KRP protein-ribulosamine 3-kinase, at 18,272 to 19,315 16286

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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17,331 + 16285 mRNA_7917 0.57 +1.0
17,480 - 16285 mRNA_7917 0.65 -2.0
17,684 - 16285 mRNA_7917 0.77 +0.1
17,789 - 16285 mRNA_7917 0.83 -0.5
17,900 + 16285 mRNA_7917 0.90 +1.7
18,055 + +1.4
18,058 - -0.0
18,219 + +1.2
18,322 - +1.9
18,351 - +1.7
18,358 - +0.3
18,417 - 16286 mRNA_7918 0.14 -1.6
18,480 - 16286 mRNA_7918 0.20 +1.2
18,788 - 16286 mRNA_7918 0.49 -2.3
18,791 - 16286 mRNA_7918 0.50 +1.8
18,915 + 16286 mRNA_7918 0.62 -0.6
18,916 - 16286 mRNA_7918 0.62 +1.1
19,036 + 16286 mRNA_7918 0.73 -2.2
19,095 + 16286 mRNA_7918 0.79 +1.2
19,100 - 16286 mRNA_7918 0.79 +0.2
19,378 - -1.0
19,588 + -1.7
19,654 - +0.2
19,764 - +1.4
19,817 - +1.8
19,831 - +0.0
19,837 + +0.6
19,914 + +2.9
19,934 - -0.5
19,935 + -0.6
20,235 + -2.5
20,291 - +0.8

Or see this region's nucleotide sequence