Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7945

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16312 and 16313 are separated by 239 nucleotides16313 and 16314 are separated by 423 nucleotides mRNA_7944: 16312 - Hypothetical Protein, at 69,518 to 70,390 16312 mRNA_7945: 16313 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 70,630 to 71,509 16313 mRNA_7946: 16314 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 71,933 to 72,812 16314

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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69,654 + 16312 mRNA_7944 0.16 +0.2
69,661 - 16312 mRNA_7944 0.16 +0.6
69,797 - 16312 mRNA_7944 0.32 +1.0
69,944 - 16312 mRNA_7944 0.49 -0.4
69,961 - 16312 mRNA_7944 0.51 -0.3
69,986 + 16312 mRNA_7944 0.54 -1.2
70,064 - 16312 mRNA_7944 0.63 -0.5
70,110 + 16312 mRNA_7944 0.68 -0.1
70,249 + 16312 mRNA_7944 0.84 -1.4
70,269 - 16312 mRNA_7944 0.86 +0.4
70,477 - -0.5
70,538 - -0.0
70,775 - 16313 mRNA_7945 0.16 +0.2
70,913 + 16313 mRNA_7945 0.32 -0.5
70,955 + 16313 mRNA_7945 0.37 -0.1
70,974 - 16313 mRNA_7945 0.39 -0.3
70,989 + 16313 mRNA_7945 0.41 +1.0
71,000 - 16313 mRNA_7945 0.42 +0.2
71,117 - 16313 mRNA_7945 0.55 +1.2
71,235 + 16313 mRNA_7945 0.69 -1.2
71,412 - 16313 mRNA_7945 0.89 +1.9
71,421 + 16313 mRNA_7945 0.90 -0.8
71,534 - +2.3
71,580 - +2.4
71,586 + -0.4
71,601 + -0.5
72,077 - 16314 mRNA_7946 0.16 +0.1
72,112 - 16314 mRNA_7946 0.20 +0.7
72,118 - 16314 mRNA_7946 0.21 +0.1
72,225 + 16314 mRNA_7946 0.33 -0.2
72,297 + 16314 mRNA_7946 0.41 +1.7
72,304 + 16314 mRNA_7946 0.42 +0.7
72,322 + 16314 mRNA_7946 0.44 -0.9
72,414 - 16314 mRNA_7946 0.55 -0.7
72,415 + 16314 mRNA_7946 0.55 -0.0
72,433 + 16314 mRNA_7946 0.57 -0.1
72,450 + 16314 mRNA_7946 0.59 +0.5
72,471 - 16314 mRNA_7946 0.61 +0.1
72,506 - 16314 mRNA_7946 0.65 +1.2

Or see this region's nucleotide sequence