Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7998

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16365 and 16366 are separated by 344 nucleotides16366 and 16367 are separated by 134 nucleotides mRNA_7997: 16365 - Hypothetical Protein, at 175,360 to 176,282 16365 mRNA_7998: 16366 - KOG3156 Uncharacterized membrane protein, at 176,627 to 177,709 16366 mRNA_7999: 16367 - K10994 RAD9A cell cycle checkpoint control protein RAD9A, at 177,844 to 179,868 16367

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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175,688 + 16365 mRNA_7997 0.36 -0.6
175,696 + 16365 mRNA_7997 0.36 -1.1
175,696 + 16365 mRNA_7997 0.36 -1.2
175,865 - 16365 mRNA_7997 0.55 -1.5
176,074 - 16365 mRNA_7997 0.77 -0.3
176,170 + 16365 mRNA_7997 0.88 +0.4
176,223 + -1.5
176,312 - +0.8
176,903 + 16366 mRNA_7998 0.25 +2.3
177,761 - +1.1
177,769 - -0.8
177,779 + +0.3
177,902 + -0.9
177,923 + -0.6
177,925 + -1.5
178,211 + 16367 mRNA_7999 0.18 -1.2

Or see this region's nucleotide sequence