Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8006

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16374 and 16375 are separated by 487 nucleotides mRNA_8006: 16374 - Hypothetical Protein, at 197,115 to 197,847 16374 mRNA_8007: 16375 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 198,335 to 201,051 16375

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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196,182 + -0.8
196,262 - -0.4
196,306 - -0.3
196,747 - +1.4
196,755 - +0.0
197,273 - 16374 mRNA_8006 0.22 -4.5
197,380 - 16374 mRNA_8006 0.36 +0.2
197,384 - 16374 mRNA_8006 0.37 +1.6
197,512 - 16374 mRNA_8006 0.54 +0.9
197,544 + 16374 mRNA_8006 0.59 -0.5
197,556 - 16374 mRNA_8006 0.60 +1.0
197,655 + 16374 mRNA_8006 0.74 +0.4
197,846 + -0.1
197,971 - +0.3
197,974 - +0.9
197,976 - -0.6
197,986 + -0.8
197,986 + -1.7
197,992 - -1.7
198,003 - +0.5
198,013 + +0.5
198,122 + +0.8
198,126 - +0.1
198,186 + -0.4
198,825 + 16375 mRNA_8007 0.18 -3.6

Or see this region's nucleotide sequence