Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8007

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16374 and 16375 are separated by 487 nucleotides mRNA_8006: 16374 - Hypothetical Protein, at 197,115 to 197,847 16374 mRNA_8007: 16375 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 198,335 to 201,051 16375

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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197,380 - 16374 mRNA_8006 0.36 +0.2
197,384 - 16374 mRNA_8006 0.37 +1.6
197,512 - 16374 mRNA_8006 0.54 +0.9
197,544 + 16374 mRNA_8006 0.59 -0.5
197,556 - 16374 mRNA_8006 0.60 +1.0
197,655 + 16374 mRNA_8006 0.74 +0.4
197,846 + -0.1
197,971 - +0.3
197,974 - +0.9
197,976 - -0.6
197,986 + -0.8
197,986 + -1.7
197,992 - -1.7
198,003 - +0.5
198,013 + +0.5
198,122 + +0.8
198,126 - +0.1
198,186 + -0.4
198,825 + 16375 mRNA_8007 0.18 -3.6
198,870 - 16375 mRNA_8007 0.20 -1.8
198,874 + 16375 mRNA_8007 0.20 -2.4
198,875 - 16375 mRNA_8007 0.20 -1.9
198,993 + 16375 mRNA_8007 0.24 -2.8
198,999 - 16375 mRNA_8007 0.24 -2.2
199,220 + 16375 mRNA_8007 0.33 -1.3
199,612 + 16375 mRNA_8007 0.47 -2.1
199,628 - 16375 mRNA_8007 0.48 -2.1
199,845 + 16375 mRNA_8007 0.56 -0.1
199,861 - 16375 mRNA_8007 0.56 -1.8
199,931 - 16375 mRNA_8007 0.59 -2.4
200,013 - 16375 mRNA_8007 0.62 -2.7
200,016 + 16375 mRNA_8007 0.62 -3.0
200,036 - 16375 mRNA_8007 0.63 -0.6
200,321 + 16375 mRNA_8007 0.73 -1.9
200,470 + 16375 mRNA_8007 0.79 -0.5
200,479 + 16375 mRNA_8007 0.79 +0.3
200,616 - 16375 mRNA_8007 0.84 -0.2
200,757 + 16375 mRNA_8007 0.89 +0.7
200,787 - +0.2
200,909 - -0.7
200,952 + -1.3
200,954 + +0.4
201,083 - -0.3
201,094 + -1.0
201,098 + -0.1
201,110 + -0.4
201,247 - +0.3
201,386 + -0.3
201,389 - +0.2
201,396 - -0.1
201,396 - +0.3
201,398 - +3.1
201,410 + -0.6
201,413 - +0.2
201,415 - -0.7
201,420 + -1.9
201,424 + -0.9
201,424 + -1.6
201,563 - +1.3
201,563 - -0.5
201,563 - +0.3
201,563 - -0.8
201,584 + +0.7
201,584 - -0.1

Or see this region's nucleotide sequence