Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8017

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16384 and 16385 are separated by 369 nucleotides16385 and 16386 are separated by 911 nucleotides mRNA_8016: 16384 - K11968 ARIH1 ariadne-1, at 216,301 to 218,518 16384 mRNA_8017: 16385 - K11087 SNRPD1, SMD1 small nuclear ribonucleoprotein D1, at 218,888 to 219,506 16385 mRNA_8018: 16386 - Hypothetical Protein, at 220,418 to 221,008 16386

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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217,993 - 16384 mRNA_8016 0.76 +0.3
218,697 - +1.0
218,723 - -0.1
218,875 - +1.1
220,018 - +0.0
220,029 - -0.6
220,032 - -1.0
220,035 - -3.2
220,043 + -0.2
220,045 + +0.2
220,060 + -0.4

Or see this region's nucleotide sequence