Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8028

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16395 and 16396 are separated by 11 nucleotides16396 and 16397 are separated by 105 nucleotides mRNA_8027: 16395 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 243,826 to 244,717 16395 mRNA_8028: 16396 - K06100 SYMPK symplekin, at 244,729 to 248,815 16396 mRNA_8029: 16397 - K02152 ATPeV1G, ATP6G V-type H+-transporting ATPase subunit G, at 248,921 to 249,552 16397

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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243,827 - +0.3
243,974 - 16395 mRNA_8027 0.17 +0.1
243,976 + 16395 mRNA_8027 0.17 +0.5
243,978 - 16395 mRNA_8027 0.17 +0.4
244,011 - 16395 mRNA_8027 0.21 -1.1
244,081 - 16395 mRNA_8027 0.29 +0.3
244,106 - 16395 mRNA_8027 0.31 +1.1
244,141 - 16395 mRNA_8027 0.35 +0.4
244,685 - +2.7
244,700 - +0.2
244,837 - +1.5
248,885 + -1.2
249,787 - -1.8

Or see this region's nucleotide sequence