Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8065

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16432 and 16433 are separated by 94 nucleotides16433 and 16434 are separated by 685 nucleotides mRNA_8064: 16432 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 333,407 to 335,918 16432 mRNA_8065: 16433 - KOG0732 AAA+-type ATPase containing the bromodomain, at 336,013 to 341,106 16433 mRNA_8066: 16434 - K20181 VPS18, PEP3 vacuolar protein sorting-associated protein 18, at 341,792 to 345,856 16434

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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335,042 + 16432 mRNA_8064 0.65 -0.2
335,154 + 16432 mRNA_8064 0.70 +0.1
335,297 + 16432 mRNA_8064 0.75 -0.9
335,322 + 16432 mRNA_8064 0.76 +1.6
335,341 + 16432 mRNA_8064 0.77 -0.2
335,472 + 16432 mRNA_8064 0.82 -0.9
335,490 - 16432 mRNA_8064 0.83 +0.3
335,822 + +0.8
335,841 - +1.1
336,808 + 16433 mRNA_8065 0.16 -1.0
340,910 + +1.7
341,059 + -0.3
341,068 + +0.3
341,098 + -0.1
341,101 + -0.9
341,112 - -0.2
341,116 + +0.8
341,126 - +1.3
341,126 - -1.2
341,127 - +1.5
341,153 - +0.2
341,193 - +0.4
341,203 - +1.0
341,204 - +0.3
341,205 - +0.5
341,205 + +1.7
341,206 - +1.7
341,214 + -1.3
341,216 + +1.0
341,217 - +0.2
341,219 - -0.4
341,225 - -1.4
341,236 + -0.1
341,334 - -0.6
341,334 - +0.1
341,336 - -0.7
341,338 + -0.3
341,344 - +0.9
341,361 - +0.3
341,376 - +0.8
341,385 - +0.3
341,407 - +0.4
341,422 + +0.7
341,431 + +1.1
341,451 + -0.2
341,477 - +0.1
341,486 - -0.1
341,500 + -0.5
341,591 - -0.4
341,607 - -0.7
341,608 - -0.4
341,626 + +0.1
341,626 - -1.1
341,644 + +1.5
341,646 + -0.0
341,649 - -0.1
341,652 - -0.5
341,658 - +0.5
341,661 - +0.4
341,665 - +0.5
341,666 + -1.2
341,670 - +0.4
341,764 - -2.4
341,773 + -1.1
341,778 + -0.4

Or see this region's nucleotide sequence