Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8066

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16433 and 16434 are separated by 685 nucleotides16434 and 16435 are separated by 711 nucleotides mRNA_8065: 16433 - KOG0732 AAA+-type ATPase containing the bromodomain, at 336,013 to 341,106 16433 mRNA_8066: 16434 - K20181 VPS18, PEP3 vacuolar protein sorting-associated protein 18, at 341,792 to 345,856 16434 mRNA_8067: 16435 - K12399 AP3S AP-3 complex subunit sigma, at 346,568 to 347,476 16435

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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340,910 + +1.7
341,059 + -0.3
341,068 + +0.3
341,098 + -0.1
341,101 + -0.9
341,112 - -0.2
341,116 + +0.8
341,126 - +1.3
341,126 - -1.2
341,127 - +1.5
341,153 - +0.2
341,193 - +0.4
341,203 - +1.0
341,204 - +0.3
341,205 - +0.5
341,205 + +1.7
341,206 - +1.7
341,214 + -1.3
341,216 + +1.0
341,217 - +0.2
341,219 - -0.4
341,225 - -1.4
341,236 + -0.1
341,334 - -0.6
341,334 - +0.1
341,336 - -0.7
341,338 + -0.3
341,344 - +0.9
341,361 - +0.3
341,376 - +0.8
341,385 - +0.3
341,407 - +0.4
341,422 + +0.7
341,431 + +1.1
341,451 + -0.2
341,477 - +0.1
341,486 - -0.1
341,500 + -0.5
341,591 - -0.4
341,607 - -0.7
341,608 - -0.4
341,626 + +0.1
341,626 - -1.1
341,644 + +1.5
341,646 + -0.0
341,649 - -0.1
341,652 - -0.5
341,658 - +0.5
341,661 - +0.4
341,665 - +0.5
341,666 + -1.2
341,670 - +0.4
341,764 - -2.4
341,773 + -1.1
341,778 + -0.4
345,866 + -1.6
346,030 - +0.0
346,117 - +0.8
346,124 + +1.5
346,124 + +0.7
346,130 + -1.3
346,161 + -0.4
346,258 - +2.9
346,280 - +2.8
346,287 - -0.4
346,288 + +0.3
346,439 + -0.7
346,445 - +0.8
346,453 + -1.4
346,458 - +0.3
346,462 - -1.3
346,470 - +0.7
346,472 - -0.3
346,541 + +0.7
346,542 - +2.0

Or see this region's nucleotide sequence