Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8072

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16439 and 16440 are separated by 365 nucleotides16440 and 16441 are separated by 405 nucleotides mRNA_8071: 16439 - Hypothetical Protein, at 357,161 to 359,241 16439 mRNA_8072: 16440 - K14684 SLC25A23S solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41, at 359,607 to 361,273 16440 mRNA_8073: 16441 - Hypothetical Protein, at 361,679 to 362,906 16441

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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358,676 - 16439 mRNA_8071 0.73 +1.7
358,979 - 16439 mRNA_8071 0.87 +1.3
358,991 + 16439 mRNA_8071 0.88 +0.4
359,119 - -1.5
359,134 + +1.2
359,162 + +0.7
359,279 + -0.7
359,286 - +0.0
359,300 - +1.5
359,420 + +0.8
359,431 - -0.1
359,431 + +1.8
359,447 - +1.0
359,698 - +0.4
359,744 + +1.0
359,748 - +1.9
360,047 - 16440 mRNA_8072 0.26 -0.6
360,146 - 16440 mRNA_8072 0.32 -0.4
360,172 - 16440 mRNA_8072 0.34 +0.9
360,889 - 16440 mRNA_8072 0.77 -0.9
361,166 + -1.2
361,170 - -4.2
361,183 - +0.8
361,192 + -0.4
361,195 - -1.1
361,309 + -0.3
361,310 - -0.1
361,329 + -0.9
361,329 + +0.3
361,337 - +1.1
361,342 + -0.3
361,459 + +0.5
361,466 - -0.1
361,477 - -0.2
361,481 + +0.1
361,482 - +1.2
361,486 - +0.9
361,489 - +0.2
361,493 - +1.1
361,494 + -0.1
361,496 - -0.2
361,501 + +0.3
361,503 - -0.7
361,606 + +0.6
361,613 - +0.2
361,615 - -0.5
361,616 - +0.1
361,616 - -0.3
361,627 - +0.0
361,633 - -1.1
361,639 - +0.1
361,641 + +0.4
361,641 + -1.3
361,643 + -0.4
361,652 - +0.8
361,655 + -0.2
361,749 - +1.7
361,760 - +1.3
361,764 - -0.6
361,767 - -0.1
361,779 - -0.1
361,788 + +2.3
361,796 - -1.3
361,801 - +0.1
361,802 + 16441 mRNA_8073 0.10 -0.2
361,803 + 16441 mRNA_8073 0.10 -0.3
361,804 + 16441 mRNA_8073 0.10 +0.5
361,929 - 16441 mRNA_8073 0.20 +0.9
361,934 + 16441 mRNA_8073 0.21 +1.3
361,941 - 16441 mRNA_8073 0.21 +0.4
361,941 - 16441 mRNA_8073 0.21 -1.5
361,954 + 16441 mRNA_8073 0.22 -0.6
362,107 - 16441 mRNA_8073 0.35 +0.8
362,108 - 16441 mRNA_8073 0.35 -1.6

Or see this region's nucleotide sequence